setFlags

setFlags

Usage

setFlags(data, cluster_flag = TRUE, well_edge_flag = TRUE)

Arguments

data

CellProfiler data following model selection and edge flagging

cluster_flag

Logical parameter; do you want worm objects in a cluster to be excluded when calculating well outliers? We recommend TRUE as the default.

well_edge_flag

Logical parameter; do you want worm objects in close proximity to the well edge to be excluded when calculating well outliers? We recommend TRUE as the default.

Value

A single data frame named raw_data that contains all CellProfiler model outputs and experimental treatments if a design file is used.