readGenotypes.Rd
readGenotypes
reads genotyping data from project specific genotyping
Google sheets.
readGenotypes(gsKey, col_types = "?")
a vector containing the google sheet keys for the genotype data to load. Your Google Sheet keys are found in your Google sheets URL. Select the string found between the slashes after spreadsheets/d in your Google Sheet URL.
a single string of readr-style short codes. Default is to
let the column classes be guessed col_types = "?"
.
See details here:
https://googlesheets4.tidyverse.org/reference/read_sheet.html
If using the nematode genotyping template, the correct col_types
are
"cDDdcdcddddddDcDDdcdcdddddddcdcccddccc". If using the general genotyping
template, the correct col_types
are "cccdcc". If using a customized
genotyping sheet the user can specify the correct column classes or allow
the fucnction to guess.
A dataframe generated from the Google sheets gsKey
argument.
If multiple Google sheets are provided the data are appended using rbind.
Note, the genotyping sheet must contain variable names specified by the
wild_isolate_genotyping_template
and the data must be found on the
sheet named genotyping template
.