Basic Commands To Know Prior¶
You should freshen up on the following terminal commands.
- cd - change directories
- rm - delete files
- cp - make a copy
Your Sequencing Data¶
In order for your sequencing data to be properly added, it is important to make sure that there are no empty/additional lines located at the bottom of your .tsv file.
What you do not want
What you do want
Once your file has no empty lines at the bottom, save the file and move onto the next instructions below.
Step By Step Instructions¶
Add your .tsv file into the
pagesfolder of your Andersenlab github directory.
Open terminal and use the
cdcommand to change directories into the
pagesfolder in your Andersenlab github directory. If you did everything correctly, when you type
lsinto your terminal, it should look something like this.
- Then run the following commands in your terminal (while still in your
$ cp yourFileName.tsv copy.tsv
$ python addDataTogt_hmm.tsv.py
After running the above commands, your sequencing data has now been added to the existing NILs dataset on Andersenlab.org. You can now remove your .tsv from the
pagesdirectory by using the
rmcommand in your terminal.
Finally, commit your changes and push your code to update the Andersenlab github.