Andersen Lab
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Protocols


C. elegans Phenotyping Methods

  • Semi-Quantitative Brood Assay
  • Pseudomonas aeruginosa Fast-killing assay
  • Staphylococcus aureus killing assay
  • Bacillus thuringiensis toxin assay on plates
  • L1 arrest survival
  • Defecation Assay
  • High-throughput Phenotyping Assay - SORTER
  • High-throughput Phenotyping Imager Assay

COPAS BIOSORT

  • COPAS Conversion of Bubble Trap
  • Andersen Lab COPAS Sorter Best Practices
  • Sorter Setup, Shutdown and Sterilization
  • Tips for Using the COPAS BIOSORT

DNA Methods

  • Yeast-mediated ligation plasmid construction
  • 96-Well DNAPrep - Omega Bio-tek
  • 96-Well High-multiplexing Tagmentation and Amplification
  • Generating Libraries for Whole-Genome Sequencing
  • Qiagen Gentra DNA preparation for C. elegans
  • DNAEasy Genomic Prep
  • 96-Well Quantification Of DNA
  • 96-Well DNAPrep - Gentra Purgene
  • Synthetic sgRNA
  • High Throughput Genotyping for Wild Isolate Identification
  • CTAB DNA Prep of A. dissimilis
  • CRISPR-Cas9 Genome Editing by RNP Injection
  • DNAEasy Genomic Prep - QiaCube

General C. elegans

  • EMS mutagenesis
  • Superbroth and HB101 growth
  • Methanol/Acetone fixation for Whole-mount staining
  • Chunking Worms
  • Flow Chart For A Cross
  • Single Worm Genotyping
  • Microinjection
  • Cleaning Worms
  • Soft Agar Freezing and Thawing
  • How to Build a NIL
  • Synchronizing Worms by Bleaching
  • Crude Dauer Pheromone Prep
  • Growing OP50 Cultures for Seeding Plates
  • Seeding NGMA Plates With Bacteria
  • Bleaching and Dispensing of C. elegans using the BioTek MicroFlo Select
  • Andersen Lab Strain Intake
  • Worm Maintenance
  • Identifying New Wild Isolates
  • Andersen Lab Nematode Field Sampling Protocol
  • Nematode Collection Protocol
  • Worm Collecting Protocol - Citizen Scientist
  • 15-hour Bacterial Food Growth
  • Cryopreservation and DNA Preps of Caenorhabditis Nematodes
  • Steps to Freeze Wild Isolate DNA Samples

General Laboratory Methods

  • How To Make Cholesterol
  • Media and Solutions Recipes
  • How to Dilute DNA Ladder
  • Autoclave Sterilizing Liquids & Labware
  • Washing Labware
  • Pouring NGMA Plates Using the Automatic Plate Pourer
  • Concentrated M9 Recipe
  • Using BioTek Microplate Dispensor
  • Set Up 96-Well Aspirator
  • Image Xpress Protocol

RNA Methods

  • RNA synthesis and annealing for RNAi injection
  • RNA Isolation Protocol

Protein Methods

  • Quantitative Western Blotting




CaeNDR Department of Biology CMDB Github